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Azure TRE
Introduction
Initializing search
GitHub
Azure TRE
GitHub
Overview
Overview
User Roles
Architecture
Architecture
System Architecture
Network Architecture
Azure Resources
Airlock
Cost Reporting
Terms and Definitions
QuickStart
QuickStart
1. Prerequisites
2. Deployment Repository
3. AD Tenant
4. Setup Auth
5. Deployment
5. Deployment
Manual
Manual
Pre-deployment Steps
Deployment Steps
CI/CD
CI/CD
Pre-deployment Steps
Deployment Steps
6. Configure Shared Services
7. Install Base Workspace
8. Install Workspace Service and User Resource
Using the Azure TRE
Using the Azure TRE
Custom Templates
Using AzureTRE for Research
Using AzureTRE for Research
Set up of a Virtual Machine
Importing/exporting data with Airlock
Reviewing Airlock Requests
Templates and Services
Templates and Services
Workspaces
Workspaces
Base
Unrestricted
Airlock Import Review
Workspace Services
Workspace Services
Azure ML
Gitea
Guacamole
InnerEye
MLFlow
Health Services
Azure Databricks
OHDSI
Shared Services
Shared Services
Gitea (Source Mirror)
Nexus (Package Mirror)
Azure CycleCloud (HPC Compute)
Airlock Notifier
User Resources
User Resources
Guacamole Windows VM
Guacamole Linux VM
Import Review VM
Export Review VM
Technical Guide
Technical Guide
Administration
Administration
Starting and Stopping Azure TRE Services
Environment Variables
Tear-down
Authentication and Authorization
Authentication and Authorization
Introduction
Manual Setup
Identities
Identities
Application Admin
API
Client
Automation Test Account
Workspaces
Registering Templates
Install Resources via API
Install Resources via API
Install Base Workspace
Install Workspace Service and User Resource
Upgrading AzureTRE Version
Upgrading Resources Version
Configuring Airlock Reviews
Supported Clouds
Development
Development
Local Development
Contributing to AzureTRE
Contributing to AzureTRE
API
UI
Resource Processor
End to End Tests
Letsencrypt
Releases
GitHub Actions
Developing Workspace Templates
Developing Workspace Templates
Authoring Workspace Templates
Firewall Rules
Pipeline Templates
Pipeline Templates
Overview
Pipeline Schema
AzureTRE CLI
Troubleshooting FAQ
Troubleshooting FAQ
Enabling Debugging for the API
API logs using deployment center
Checking the Service Bus
Checking Logs in Application Insights
Troubleshooting the Resource Processor
Troubleshooting the Airlock
Manually edit resources in Cosmos DB
Troubleshooting cloud-init
Contributing
Using the Azure TRE
This section contains information relevant on how to use AzureTRE.