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Azure TRE

Introduction

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Azure TRE

Overview
Overview
- User Roles
- Architecture
  Architecture
- Terms and Definitions
QuickStart
QuickStart
- 1. Prerequisites
- 2. Deployment Repository
- 3. AD Tenant
- 4. Setup Auth
- 5. Deployment
  5. Deployment
  - Manual
    Manual
    
    Pre-deployment Steps
    
    Deployment Steps
  - CI/CD
    CI/CD
    
    Pre-deployment Steps
    
    Deployment Steps
- 6. Configure Shared Services
- 7. Install Base Workspace
- 8. Install Workspace Service and User Resource
Using the Azure TRE
Using the Azure TRE
- Custom Templates
- Using AzureTRE for Research
  Using AzureTRE for Research
Templates and Services
Templates and Services
- Workspaces
  Workspaces
- Workspace Services
  Workspace Services
  - Azure ML
  - Gitea
  - Guacamole
  - InnerEye
  - MLFlow
  - Health Services
  - Azure Databricks
  - OHDSI
- Shared Services
  Shared Services
- User Resources
  User Resources
Technical Guide
Technical Guide
- Administration
  Administration
  - Starting and Stopping Azure TRE Services
  - Environment Variables
  - Tear-down
  - Authentication and Authorization
    Authentication and Authorization
    
    Introduction
    
    Manual Setup
    
    Identities
    Identities
    
    Application Admin
    
    API
    
    Client
    
    Automation Test Account
    
    Workspaces
  - Registering Templates
  - Install Resources via API
    Install Resources via API
    
    Install Base Workspace
    
    Install Workspace Service and User Resource
  - Upgrading AzureTRE Version
  - Upgrading Resources Version
  - Configuring Airlock Reviews
  - Supported Clouds
- Development
  Development
  - Local Development
  - Contributing to AzureTRE
    
    Contributing to AzureTRE
    
    API
    
    UI
    
    Resource Processor
    
    End to End Tests
    
    Letsencrypt
    
    Releases
    
    GitHub Actions
  - Developing Workspace Templates
    Developing Workspace Templates
    
    Authoring Workspace Templates
    
    Firewall Rules
    
    Pipeline Templates
    Pipeline Templates
    
    Overview
    
    Pipeline Schema
- AzureTRE CLI
- Troubleshooting FAQ
  Troubleshooting FAQ
Contributing

Using the Azure TRE for Research

This section contains information relevant on how to conduct research in a TRE workspace.

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