Defaults API Reference
======================
.. automodule:: scistanpy.defaults
   :undoc-members:
   :show-inheritance:

Default values can be grouped into several categories based on their use within the SciStanPy package. Below is an overview of the default values provided by the module.

Maximum Likelihood Estimation Defaults
--------------------------------------
Default values used in methods that rely on maximum likelihood estimation for fitting models.

.. autodata:: scistanpy.defaults.DEFAULT_N_EPOCHS
.. autodata:: scistanpy.defaults.DEFAULT_EARLY_STOP
.. autodata:: scistanpy.defaults.DEFAULT_LR

Stan Variable Naming Defaults
-----------------------------
Default values for index variable names in autogenerated Stan code.

.. autodata:: scistanpy.defaults.DEFAULT_INDEX_ORDER

XArray Dimension Naming Defaults
--------------------------------
Default dimension names used when converting SciStanPy objects to XArray data structures.

.. autodata:: scistanpy.defaults.DEFAULT_DIM_NAMES

Stan Compilation Defaults
-------------------------
Default values related to the compilation of Stan models.

.. autodata:: scistanpy.defaults.DEFAULT_FORCE_COMPILE
.. autodata:: scistanpy.defaults.DEFAULT_CPP_OPTIONS
.. autodata:: scistanpy.defaults.DEFAULT_USER_HEADER
.. autodata:: scistanpy.defaults.DEFAULT_MODEL_NAME

Diagnostic Threshold Defaults
-----------------------------
Default thresholds used for model diagnostics.

.. autodata:: scistanpy.defaults.DEFAULT_EBFMI_THRESH
.. autodata:: scistanpy.defaults.DEFAULT_ESS_THRESH
.. autodata:: scistanpy.defaults.DEFAULT_RHAT_THRESH