Using RetrieveChat Powered by PGVector for Retrieve Augmented Code Generation and Question Answering
AutoGen offers conversable agents powered by LLM, tool or human, which can be used to perform tasks collectively via automated chat. This framework allows tool use and human participation through multi-agent conversation. Please find documentation about this feature here.
RetrieveChat is a conversational system for retrieval-augmented code
generation and question answering. In this notebook, we demonstrate how
to utilize RetrieveChat to generate code and answer questions based on
customized documentations that are not present in the LLM’s training
dataset. RetrieveChat uses the AssistantAgent and
RetrieveUserProxyAgent, which is similar to the usage of
AssistantAgent and UserProxyAgent in other notebooks (e.g.,
Automated Task Solving with Code Generation, Execution &
Debugging).
Essentially, RetrieveUserProxyAgent implement a different auto-reply
mechanism corresponding to the RetrieveChat prompts.
Table of Contents
We’ll demonstrate six examples of using RetrieveChat for code generation and question answering:
- Example 1: Generate code based off docstrings w/o human feedback
- Example 2: Answer a question based off docstrings w/o human feedback
Requirements
Some extra dependencies are needed for this notebook, which can be installed via pip:
pip install pyautogen[retrievechat-pgvector] flaml[automl]
For more information, please refer to the installation guide.
Ensure you have a PGVector instance.
If not, a test version can quickly be deployed using Docker.
docker-compose.yml
version: '3.9'
services:
pgvector:
image: pgvector/pgvector:pg16
shm_size: 128mb
restart: unless-stopped
ports:
- "5432:5432"
environment:
POSTGRES_USER: <postgres-user>
POSTGRES_PASSWORD: <postgres-password>
POSTGRES_DB: <postgres-database>
volumes:
- ./init.sql:/docker-entrypoint-initdb.d/init.sql
Create init.sql file
CREATE EXTENSION IF NOT EXISTS vector;
Set your API Endpoint
The
config_list_from_json
function loads a list of configurations from an environment variable or
a json file.
import json
import os
import chromadb
import psycopg
from sentence_transformers import SentenceTransformer
import autogen
from autogen import AssistantAgent
from autogen.agentchat.contrib.retrieve_user_proxy_agent import RetrieveUserProxyAgent
# Accepted file formats for that can be stored in
# a vector database instance
from autogen.retrieve_utils import TEXT_FORMATS
config_list = autogen.config_list_from_json(
"OAI_CONFIG_LIST",
file_location=".",
)
assert len(config_list) > 0
print("models to use: ", [config_list[i]["model"] for i in range(len(config_list))])
models to use: ['gpt4-1106-preview', 'gpt-4o', 'gpt-35-turbo', 'gpt-35-turbo-0613']
tip
Learn more about configuring LLMs for agents here.
Construct agents for RetrieveChat
We start by initializing the AssistantAgent and
RetrieveUserProxyAgent. The system message needs to be set to “You are
a helpful assistant.” for AssistantAgent. The detailed instructions are
given in the user message. Later we will use the
RetrieveUserProxyAgent.message_generator to combine the instructions
and a retrieval augmented generation task for an initial prompt to be
sent to the LLM assistant.
print("Accepted file formats for `docs_path`:")
print(TEXT_FORMATS)
Accepted file formats for `docs_path`:
['yaml', 'ppt', 'rst', 'jsonl', 'xml', 'txt', 'yml', 'log', 'rtf', 'msg', 'xlsx', 'htm', 'pdf', 'org', 'pptx', 'md', 'docx', 'epub', 'tsv', 'csv', 'html', 'doc', 'odt', 'json']
# 1. create an AssistantAgent instance named "assistant"
assistant = AssistantAgent(
name="assistant",
system_message="You are a helpful assistant. You must always reply with some form of text.",
llm_config={
"timeout": 600,
"cache_seed": 42,
"config_list": config_list,
},
)
# Optionally create psycopg conn object
# conn = psycopg.connect(conninfo="postgresql://postgres:postgres@localhost:5432/postgres", autocommit=True)
# Optionally create embedding function object
sentence_transformer_ef = SentenceTransformer("all-distilroberta-v1").encode
# 2. create the RetrieveUserProxyAgent instance named "ragproxyagent"
# Refer to https://microsoft.github.io/autogen/docs/reference/agentchat/contrib/retrieve_user_proxy_agent
# and https://microsoft.github.io/autogen/docs/reference/agentchat/contrib/vectordb/pgvectordb
# for more information on the RetrieveUserProxyAgent and PGVectorDB
ragproxyagent = RetrieveUserProxyAgent(
name="ragproxyagent",
human_input_mode="NEVER",
max_consecutive_auto_reply=1,
retrieve_config={
"task": "code",
"docs_path": [
"https://raw.githubusercontent.com/microsoft/FLAML/main/website/docs/Examples/Integrate%20-%20Spark.md",
"https://raw.githubusercontent.com/microsoft/FLAML/main/website/docs/Research.md",
],
"chunk_token_size": 2000,
"model": config_list[0]["model"],
"vector_db": "pgvector", # PGVector database
"collection_name": "flaml_collection",
"db_config": {
"connection_string": "postgresql://postgres:postgres@localhost:5432/postgres", # Optional - connect to an external vector database
# "host": "postgres", # Optional vector database host
# "port": 5432, # Optional vector database port
# "dbname": "postgres", # Optional vector database name
# "username": "postgres", # Optional vector database username
# "password": "postgres", # Optional vector database password
# "conn": conn, # Optional - conn object to connect to database
},
"get_or_create": True, # set to False if you don't want to reuse an existing collection
"overwrite": True, # set to True if you want to overwrite an existing collection
"embedding_function": sentence_transformer_ef, # If left out SentenceTransformer("all-MiniLM-L6-v2").encode will be used
},
code_execution_config=False, # set to False if you don't want to execute the code
)
/home/lijiang1/anaconda3/envs/autogen/lib/python3.10/site-packages/transformers/utils/generic.py:311: UserWarning: torch.utils._pytree._register_pytree_node is deprecated. Please use torch.utils._pytree.register_pytree_node instead.
torch.utils._pytree._register_pytree_node(
Example 1
Use RetrieveChat to help generate sample code and automatically run the code and fix errors if there is any.
Problem: Which API should I use if I want to use FLAML for a classification task and I want to train the model in 30 seconds. Use spark to parallel the training. Force cancel jobs if time limit is reached.
# reset the assistant. Always reset the assistant before starting a new conversation.
assistant.reset()
# given a problem, we use the ragproxyagent to generate a prompt to be sent to the assistant as the initial message.
# the assistant receives the message and generates a response. The response will be sent back to the ragproxyagent for processing.
# The conversation continues until the termination condition is met, in RetrieveChat, the termination condition when no human-in-loop is no code block detected.
# With human-in-loop, the conversation will continue until the user says "exit".
code_problem = "How can I use FLAML to perform a classification task and use spark to do parallel training. Train for 30 seconds and force cancel jobs if time limit is reached."
chat_result = ragproxyagent.initiate_chat(
assistant, message=ragproxyagent.message_generator, problem=code_problem, search_string="spark"
)
Trying to create collection.
VectorDB returns doc_ids: [['bdfbc921', '7968cf3c']]
Adding content of doc bdfbc921 to context.
Adding content of doc 7968cf3c to context.
ragproxyagent (to assistant):
You're a retrieve augmented coding assistant. You answer user's questions based on your own knowledge and the
context provided by the user.
If you can't answer the question with or without the current context, you should reply exactly `UPDATE CONTEXT`.
For code generation, you must obey the following rules:
Rule 1. You MUST NOT install any packages because all the packages needed are already installed.
Rule 2. You must follow the formats below to write your code:
```language
# your code
```
User's question is: How can I use FLAML to perform a classification task and use spark to do parallel training. Train for 30 seconds and force cancel jobs if time limit is reached.
Context is: # Integrate - Spark
FLAML has integrated Spark for distributed training. There are two main aspects of integration with Spark:
- Use Spark ML estimators for AutoML.
- Use Spark to run training in parallel spark jobs.
## Spark ML Estimators
FLAML integrates estimators based on Spark ML models. These models are trained in parallel using Spark, so we called them Spark estimators. To use these models, you first need to organize your data in the required format.
### Data
For Spark estimators, AutoML only consumes Spark data. FLAML provides a convenient function `to_pandas_on_spark` in the `flaml.automl.spark.utils` module to convert your data into a pandas-on-spark (`pyspark.pandas`) dataframe/series, which Spark estimators require.
This utility function takes data in the form of a `pandas.Dataframe` or `pyspark.sql.Dataframe` and converts it into a pandas-on-spark dataframe. It also takes `pandas.Series` or `pyspark.sql.Dataframe` and converts it into a [pandas-on-spark](https://spark.apache.org/docs/latest/api/python/user_guide/pandas_on_spark/index.html) series. If you pass in a `pyspark.pandas.Dataframe`, it will not make any changes.
This function also accepts optional arguments `index_col` and `default_index_type`.
- `index_col` is the column name to use as the index, default is None.
- `default_index_type` is the default index type, default is "distributed-sequence". More info about default index type could be found on Spark official [documentation](https://spark.apache.org/docs/latest/api/python/user_guide/pandas_on_spark/options.html#default-index-type)
Here is an example code snippet for Spark Data:
```python
import pandas as pd
from flaml.automl.spark.utils import to_pandas_on_spark
# Creating a dictionary
data = {
"Square_Feet": [800, 1200, 1800, 1500, 850],
"Age_Years": [20, 15, 10, 7, 25],
"Price": [100000, 200000, 300000, 240000, 120000],
}
# Creating a pandas DataFrame
dataframe = pd.DataFrame(data)
label = "Price"
# Convert to pandas-on-spark dataframe
psdf = to_pandas_on_spark(dataframe)
```
To use Spark ML models you need to format your data appropriately. Specifically, use [`VectorAssembler`](https://spark.apache.org/docs/latest/api/python/reference/api/pyspark.ml.feature.VectorAssembler.html) to merge all feature columns into a single vector column.
Here is an example of how to use it:
```python
from pyspark.ml.feature import VectorAssembler
columns = psdf.columns
feature_cols = [col for col in columns if col != label]
featurizer = VectorAssembler(inputCols=feature_cols, outputCol="features")
psdf = featurizer.transform(psdf.to_spark(index_col="index"))["index", "features"]
```
Later in conducting the experiment, use your pandas-on-spark data like non-spark data and pass them using `X_train, y_train` or `dataframe, label`.
### Estimators
#### Model List
- `lgbm_spark`: The class for fine-tuning Spark version LightGBM models, using [SynapseML](https://microsoft.github.io/SynapseML/docs/features/lightgbm/about/) API.
#### Usage
First, prepare your data in the required format as described in the previous section.
By including the models you intend to try in the `estimators_list` argument to `flaml.automl`, FLAML will start trying configurations for these models. If your input is Spark data, FLAML will also use estimators with the `_spark` postfix by default, even if you haven't specified them.
Here is an example code snippet using SparkML models in AutoML:
```python
import flaml
# prepare your data in pandas-on-spark format as we previously mentioned
automl = flaml.AutoML()
settings = {
"time_budget": 30,
"metric": "r2",
"estimator_list": ["lgbm_spark"], # this setting is optional
"task": "regression",
}
automl.fit(
dataframe=psdf,
label=label,
**settings,
)
```
[Link to notebook](https://github.com/microsoft/FLAML/blob/main/notebook/automl_bankrupt_synapseml.ipynb) | [Open in colab](https://colab.research.google.com/github/microsoft/FLAML/blob/main/notebook/automl_bankrupt_synapseml.ipynb)
## Parallel Spark Jobs
You can activate Spark as the parallel backend during parallel tuning in both [AutoML](/docs/Use-Cases/Task-Oriented-AutoML#parallel-tuning) and [Hyperparameter Tuning](/docs/Use-Cases/Tune-User-Defined-Function#parallel-tuning), by setting the `use_spark` to `true`. FLAML will dispatch your job to the distributed Spark backend using [`joblib-spark`](https://github.com/joblib/joblib-spark).
Please note that you should not set `use_spark` to `true` when applying AutoML and Tuning for Spark Data. This is because only SparkML models will be used for Spark Data in AutoML and Tuning. As SparkML models run in parallel, there is no need to distribute them with `use_spark` again.
All the Spark-related arguments are stated below. These arguments are available in both Hyperparameter Tuning and AutoML:
- `use_spark`: boolean, default=False | Whether to use spark to run the training in parallel spark jobs. This can be used to accelerate training on large models and large datasets, but will incur more overhead in time and thus slow down training in some cases. GPU training is not supported yet when use_spark is True. For Spark clusters, by default, we will launch one trial per executor. However, sometimes we want to launch more trials than the number of executors (e.g., local mode). In this case, we can set the environment variable `FLAML_MAX_CONCURRENT` to override the detected `num_executors`. The final number of concurrent trials will be the minimum of `n_concurrent_trials` and `num_executors`.
- `n_concurrent_trials`: int, default=1 | The number of concurrent trials. When n_concurrent_trials > 1, FLAML performes parallel tuning.
- `force_cancel`: boolean, default=False | Whether to forcely cancel Spark jobs if the search time exceeded the time budget. Spark jobs include parallel tuning jobs and Spark-based model training jobs.
An example code snippet for using parallel Spark jobs:
```python
import flaml
automl_experiment = flaml.AutoML()
automl_settings = {
"time_budget": 30,
"metric": "r2",
"task": "regression",
"n_concurrent_trials": 2,
"use_spark": True,
"force_cancel": True, # Activating the force_cancel option can immediately halt Spark jobs once they exceed the allocated time_budget.
}
automl.fit(
dataframe=dataframe,
label=label,
**automl_settings,
)
```
[Link to notebook](https://github.com/microsoft/FLAML/blob/main/notebook/integrate_spark.ipynb) | [Open in colab](https://colab.research.google.com/github/microsoft/FLAML/blob/main/notebook/integrate_spark.ipynb)
# Research
For technical details, please check our research publications.
- [FLAML: A Fast and Lightweight AutoML Library](https://www.microsoft.com/en-us/research/publication/flaml-a-fast-and-lightweight-automl-library/). Chi Wang, Qingyun Wu, Markus Weimer, Erkang Zhu. MLSys 2021.
```bibtex
@inproceedings{wang2021flaml,
title={FLAML: A Fast and Lightweight AutoML Library},
author={Chi Wang and Qingyun Wu and Markus Weimer and Erkang Zhu},
year={2021},
booktitle={MLSys},
}
```
- [Frugal Optimization for Cost-related Hyperparameters](https://arxiv.org/abs/2005.01571). Qingyun Wu, Chi Wang, Silu Huang. AAAI 2021.
```bibtex
@inproceedings{wu2021cfo,
title={Frugal Optimization for Cost-related Hyperparameters},
author={Qingyun Wu and Chi Wang and Silu Huang},
year={2021},
booktitle={AAAI},
}
```
- [Economical Hyperparameter Optimization With Blended Search Strategy](https://www.microsoft.com/en-us/research/publication/economical-hyperparameter-optimization-with-blended-search-strategy/). Chi Wang, Qingyun Wu, Silu Huang, Amin Saied. ICLR 2021.
```bibtex
@inproceedings{wang2021blendsearch,
title={Economical Hyperparameter Optimization With Blended Search Strategy},
author={Chi Wang and Qingyun Wu and Silu Huang and Amin Saied},
year={2021},
booktitle={ICLR},
}
```
- [An Empirical Study on Hyperparameter Optimization for Fine-Tuning Pre-trained Language Models](https://aclanthology.org/2021.acl-long.178.pdf). Susan Xueqing Liu, Chi Wang. ACL 2021.
```bibtex
@inproceedings{liuwang2021hpolm,
title={An Empirical Study on Hyperparameter Optimization for Fine-Tuning Pre-trained Language Models},
author={Susan Xueqing Liu and Chi Wang},
year={2021},
booktitle={ACL},
}
```
- [ChaCha for Online AutoML](https://www.microsoft.com/en-us/research/publication/chacha-for-online-automl/). Qingyun Wu, Chi Wang, John Langford, Paul Mineiro and Marco Rossi. ICML 2021.
```bibtex
@inproceedings{wu2021chacha,
title={ChaCha for Online AutoML},
author={Qingyun Wu and Chi Wang and John Langford and Paul Mineiro and Marco Rossi},
year={2021},
booktitle={ICML},
}
```
- [Fair AutoML](https://arxiv.org/abs/2111.06495). Qingyun Wu, Chi Wang. ArXiv preprint arXiv:2111.06495 (2021).
```bibtex
@inproceedings{wuwang2021fairautoml,
title={Fair AutoML},
author={Qingyun Wu and Chi Wang},
year={2021},
booktitle={ArXiv preprint arXiv:2111.06495},
}
```
- [Mining Robust Default Configurations for Resource-constrained AutoML](https://arxiv.org/abs/2202.09927). Moe Kayali, Chi Wang. ArXiv preprint arXiv:2202.09927 (2022).
```bibtex
@inproceedings{kayaliwang2022default,
title={Mining Robust Default Configurations for Resource-constrained AutoML},
author={Moe Kayali and Chi Wang},
year={2022},
booktitle={ArXiv preprint arXiv:2202.09927},
}
```
- [Targeted Hyperparameter Optimization with Lexicographic Preferences Over Multiple Objectives](https://openreview.net/forum?id=0Ij9_q567Ma). Shaokun Zhang, Feiran Jia, Chi Wang, Qingyun Wu. ICLR 2023 (notable-top-5%).
```bibtex
@inproceedings{zhang2023targeted,
title={Targeted Hyperparameter Optimization with Lexicographic Preferences Over Multiple Objectives},
author={Shaokun Zhang and Feiran Jia and Chi Wang and Qingyun Wu},
booktitle={International Conference on Learning Representations},
year={2023},
url={https://openreview.net/forum?id=0Ij9_q567Ma},
}
```
- [Cost-Effective Hyperparameter Optimization for Large Language Model Generation Inference](https://arxiv.org/abs/2303.04673). Chi Wang, Susan Xueqing Liu, Ahmed H. Awadallah. ArXiv preprint arXiv:2303.04673 (2023).
```bibtex
@inproceedings{wang2023EcoOptiGen,
title={Cost-Effective Hyperparameter Optimization for Large Language Model Generation Inference},
author={Chi Wang and Susan Xueqing Liu and Ahmed H. Awadallah},
year={2023},
booktitle={ArXiv preprint arXiv:2303.04673},
}
```
- [An Empirical Study on Challenging Math Problem Solving with GPT-4](https://arxiv.org/abs/2306.01337). Yiran Wu, Feiran Jia, Shaokun Zhang, Hangyu Li, Erkang Zhu, Yue Wang, Yin Tat Lee, Richard Peng, Qingyun Wu, Chi Wang. ArXiv preprint arXiv:2306.01337 (2023).
```bibtex
@inproceedings{wu2023empirical,
title={An Empirical Study on Challenging Math Problem Solving with GPT-4},
author={Yiran Wu and Feiran Jia and Shaokun Zhang and Hangyu Li and Erkang Zhu and Yue Wang and Yin Tat Lee and Richard Peng and Qingyun Wu and Chi Wang},
year={2023},
booktitle={ArXiv preprint arXiv:2306.01337},
}
```
--------------------------------------------------------------------------------
ragproxyagent (to assistant):
You're a retrieve augmented coding assistant. You answer user's questions based on your own knowledge and the
context provided by the user.
If you can't answer the question with or without the current context, you should reply exactly `UPDATE CONTEXT`.
For code generation, you must obey the following rules:
Rule 1. You MUST NOT install any packages because all the packages needed are already installed.
Rule 2. You must follow the formats below to write your code:
```language
# your code
```
User's question is: How can I use FLAML to perform a classification task and use spark to do parallel training. Train for 30 seconds and force cancel jobs if time limit is reached.
Context is: # Integrate - Spark
FLAML has integrated Spark for distributed training. There are two main aspects of integration with Spark:
- Use Spark ML estimators for AutoML.
- Use Spark to run training in parallel spark jobs.
## Spark ML Estimators
FLAML integrates estimators based on Spark ML models. These models are trained in parallel using Spark, so we called them Spark estimators. To use these models, you first need to organize your data in the required format.
### Data
For Spark estimators, AutoML only consumes Spark data. FLAML provides a convenient function `to_pandas_on_spark` in the `flaml.automl.spark.utils` module to convert your data into a pandas-on-spark (`pyspark.pandas`) dataframe/series, which Spark estimators require.
This utility function takes data in the form of a `pandas.Dataframe` or `pyspark.sql.Dataframe` and converts it into a pandas-on-spark dataframe. It also takes `pandas.Series` or `pyspark.sql.Dataframe` and converts it into a [pandas-on-spark](https://spark.apache.org/docs/latest/api/python/user_guide/pandas_on_spark/index.html) series. If you pass in a `pyspark.pandas.Dataframe`, it will not make any changes.
This function also accepts optional arguments `index_col` and `default_index_type`.
- `index_col` is the column name to use as the index, default is None.
- `default_index_type` is the default index type, default is "distributed-sequence". More info about default index type could be found on Spark official [documentation](https://spark.apache.org/docs/latest/api/python/user_guide/pandas_on_spark/options.html#default-index-type)
Here is an example code snippet for Spark Data:
```python
import pandas as pd
from flaml.automl.spark.utils import to_pandas_on_spark
# Creating a dictionary
data = {
"Square_Feet": [800, 1200, 1800, 1500, 850],
"Age_Years": [20, 15, 10, 7, 25],
"Price": [100000, 200000, 300000, 240000, 120000],
}
# Creating a pandas DataFrame
dataframe = pd.DataFrame(data)
label = "Price"
# Convert to pandas-on-spark dataframe
psdf = to_pandas_on_spark(dataframe)
```
To use Spark ML models you need to format your data appropriately. Specifically, use [`VectorAssembler`](https://spark.apache.org/docs/latest/api/python/reference/api/pyspark.ml.feature.VectorAssembler.html) to merge all feature columns into a single vector column.
Here is an example of how to use it:
```python
from pyspark.ml.feature import VectorAssembler
columns = psdf.columns
feature_cols = [col for col in columns if col != label]
featurizer = VectorAssembler(inputCols=feature_cols, outputCol="features")
psdf = featurizer.transform(psdf.to_spark(index_col="index"))["index", "features"]
```
Later in conducting the experiment, use your pandas-on-spark data like non-spark data and pass them using `X_train, y_train` or `dataframe, label`.
### Estimators
#### Model List
- `lgbm_spark`: The class for fine-tuning Spark version LightGBM models, using [SynapseML](https://microsoft.github.io/SynapseML/docs/features/lightgbm/about/) API.
#### Usage
First, prepare your data in the required format as described in the previous section.
By including the models you intend to try in the `estimators_list` argument to `flaml.automl`, FLAML will start trying configurations for these models. If your input is Spark data, FLAML will also use estimators with the `_spark` postfix by default, even if you haven't specified them.
Here is an example code snippet using SparkML models in AutoML:
```python
import flaml
# prepare your data in pandas-on-spark format as we previously mentioned
automl = flaml.AutoML()
settings = {
"time_budget": 30,
"metric": "r2",
"estimator_list": ["lgbm_spark"], # this setting is optional
"task": "regression",
}
automl.fit(
dataframe=psdf,
label=label,
**settings,
)
```
[Link to notebook](https://github.com/microsoft/FLAML/blob/main/notebook/automl_bankrupt_synapseml.ipynb) | [Open in colab](https://colab.research.google.com/github/microsoft/FLAML/blob/main/notebook/automl_bankrupt_synapseml.ipynb)
## Parallel Spark Jobs
You can activate Spark as the parallel backend during parallel tuning in both [AutoML](/docs/Use-Cases/Task-Oriented-AutoML#parallel-tuning) and [Hyperparameter Tuning](/docs/Use-Cases/Tune-User-Defined-Function#parallel-tuning), by setting the `use_spark` to `true`. FLAML will dispatch your job to the distributed Spark backend using [`joblib-spark`](https://github.com/joblib/joblib-spark).
Please note that you should not set `use_spark` to `true` when applying AutoML and Tuning for Spark Data. This is because only SparkML models will be used for Spark Data in AutoML and Tuning. As SparkML models run in parallel, there is no need to distribute them with `use_spark` again.
All the Spark-related arguments are stated below. These arguments are available in both Hyperparameter Tuning and AutoML:
- `use_spark`: boolean, default=False | Whether to use spark to run the training in parallel spark jobs. This can be used to accelerate training on large models and large datasets, but will incur more overhead in time and thus slow down training in some cases. GPU training is not supported yet when use_spark is True. For Spark clusters, by default, we will launch one trial per executor. However, sometimes we want to launch more trials than the number of executors (e.g., local mode). In this case, we can set the environment variable `FLAML_MAX_CONCURRENT` to override the detected `num_executors`. The final number of concurrent trials will be the minimum of `n_concurrent_trials` and `num_executors`.
- `n_concurrent_trials`: int, default=1 | The number of concurrent trials. When n_concurrent_trials > 1, FLAML performes parallel tuning.
- `force_cancel`: boolean, default=False | Whether to forcely cancel Spark jobs if the search time exceeded the time budget. Spark jobs include parallel tuning jobs and Spark-based model training jobs.
An example code snippet for using parallel Spark jobs:
```python
import flaml
automl_experiment = flaml.AutoML()
automl_settings = {
"time_budget": 30,
"metric": "r2",
"task": "regression",
"n_concurrent_trials": 2,
"use_spark": True,
"force_cancel": True, # Activating the force_cancel option can immediately halt Spark jobs once they exceed the allocated time_budget.
}
automl.fit(
dataframe=dataframe,
label=label,
**automl_settings,
)
```
[Link to notebook](https://github.com/microsoft/FLAML/blob/main/notebook/integrate_spark.ipynb) | [Open in colab](https://colab.research.google.com/github/microsoft/FLAML/blob/main/notebook/integrate_spark.ipynb)
# Research
For technical details, please check our research publications.
- [FLAML: A Fast and Lightweight AutoML Library](https://www.microsoft.com/en-us/research/publication/flaml-a-fast-and-lightweight-automl-library/). Chi Wang, Qingyun Wu, Markus Weimer, Erkang Zhu. MLSys 2021.
```bibtex
@inproceedings{wang2021flaml,
title={FLAML: A Fast and Lightweight AutoML Library},
author={Chi Wang and Qingyun Wu and Markus Weimer and Erkang Zhu},
year={2021},
booktitle={MLSys},
}
```
- [Frugal Optimization for Cost-related Hyperparameters](https://arxiv.org/abs/2005.01571). Qingyun Wu, Chi Wang, Silu Huang. AAAI 2021.
```bibtex
@inproceedings{wu2021cfo,
title={Frugal Optimization for Cost-related Hyperparameters},
author={Qingyun Wu and Chi Wang and Silu Huang},
year={2021},
booktitle={AAAI},
}
```
- [Economical Hyperparameter Optimization With Blended Search Strategy](https://www.microsoft.com/en-us/research/publication/economical-hyperparameter-optimization-with-blended-search-strategy/). Chi Wang, Qingyun Wu, Silu Huang, Amin Saied. ICLR 2021.
```bibtex
@inproceedings{wang2021blendsearch,
title={Economical Hyperparameter Optimization With Blended Search Strategy},
author={Chi Wang and Qingyun Wu and Silu Huang and Amin Saied},
year={2021},
booktitle={ICLR},
}
```
- [An Empirical Study on Hyperparameter Optimization for Fine-Tuning Pre-trained Language Models](https://aclanthology.org/2021.acl-long.178.pdf). Susan Xueqing Liu, Chi Wang. ACL 2021.
```bibtex
@inproceedings{liuwang2021hpolm,
title={An Empirical Study on Hyperparameter Optimization for Fine-Tuning Pre-trained Language Models},
author={Susan Xueqing Liu and Chi Wang},
year={2021},
booktitle={ACL},
}
```
- [ChaCha for Online AutoML](https://www.microsoft.com/en-us/research/publication/chacha-for-online-automl/). Qingyun Wu, Chi Wang, John Langford, Paul Mineiro and Marco Rossi. ICML 2021.
```bibtex
@inproceedings{wu2021chacha,
title={ChaCha for Online AutoML},
author={Qingyun Wu and Chi Wang and John Langford and Paul Mineiro and Marco Rossi},
year={2021},
booktitle={ICML},
}
```
- [Fair AutoML](https://arxiv.org/abs/2111.06495). Qingyun Wu, Chi Wang. ArXiv preprint arXiv:2111.06495 (2021).
```bibtex
@inproceedings{wuwang2021fairautoml,
title={Fair AutoML},
author={Qingyun Wu and Chi Wang},
year={2021},
booktitle={ArXiv preprint arXiv:2111.06495},
}
```
- [Mining Robust Default Configurations for Resource-constrained AutoML](https://arxiv.org/abs/2202.09927). Moe Kayali, Chi Wang. ArXiv preprint arXiv:2202.09927 (2022).
```bibtex
@inproceedings{kayaliwang2022default,
title={Mining Robust Default Configurations for Resource-constrained AutoML},
author={Moe Kayali and Chi Wang},
year={2022},
booktitle={ArXiv preprint arXiv:2202.09927},
}
```
- [Targeted Hyperparameter Optimization with Lexicographic Preferences Over Multiple Objectives](https://openreview.net/forum?id=0Ij9_q567Ma). Shaokun Zhang, Feiran Jia, Chi Wang, Qingyun Wu. ICLR 2023 (notable-top-5%).
```bibtex
@inproceedings{zhang2023targeted,
title={Targeted Hyperparameter Optimization with Lexicographic Preferences Over Multiple Objectives},
author={Shaokun Zhang and Feiran Jia and Chi Wang and Qingyun Wu},
booktitle={International Conference on Learning Representations},
year={2023},
url={https://openreview.net/forum?id=0Ij9_q567Ma},
}
```
- [Cost-Effective Hyperparameter Optimization for Large Language Model Generation Inference](https://arxiv.org/abs/2303.04673). Chi Wang, Susan Xueqing Liu, Ahmed H. Awadallah. ArXiv preprint arXiv:2303.04673 (2023).
```bibtex
@inproceedings{wang2023EcoOptiGen,
title={Cost-Effective Hyperparameter Optimization for Large Language Model Generation Inference},
author={Chi Wang and Susan Xueqing Liu and Ahmed H. Awadallah},
year={2023},
booktitle={ArXiv preprint arXiv:2303.04673},
}
```
- [An Empirical Study on Challenging Math Problem Solving with GPT-4](https://arxiv.org/abs/2306.01337). Yiran Wu, Feiran Jia, Shaokun Zhang, Hangyu Li, Erkang Zhu, Yue Wang, Yin Tat Lee, Richard Peng, Qingyun Wu, Chi Wang. ArXiv preprint arXiv:2306.01337 (2023).
```bibtex
@inproceedings{wu2023empirical,
title={An Empirical Study on Challenging Math Problem Solving with GPT-4},
author={Yiran Wu and Feiran Jia and Shaokun Zhang and Hangyu Li and Erkang Zhu and Yue Wang and Yin Tat Lee and Richard Peng and Qingyun Wu and Chi Wang},
year={2023},
booktitle={ArXiv preprint arXiv:2306.01337},
}
```
--------------------------------------------------------------------------------
assistant (to ragproxyagent):
Based on the provided context which details the integration of Spark with FLAML for distributed training, and the requirement to perform a classification task with parallel training in Spark, here's a code snippet that configures FLAML to train a classification model for 30 seconds and cancels the jobs if the time limit is reached.
```python
from flaml import AutoML
from flaml.automl.spark.utils import to_pandas_on_spark
import pandas as pd
# Your pandas DataFrame 'data' goes here
# Assuming 'data' is already a pandas DataFrame with appropriate data for classification
# and 'label_column' is the name of the column that we want to predict.
# First, convert your pandas DataFrame to a pandas-on-spark DataFrame
psdf = to_pandas_on_spark(data)
# Now, we prepare the settings for the AutoML training with Spark
automl_settings = {
"time_budget": 30, # Train for 30 seconds
"metric": "accuracy", # Assuming you want to use accuracy as the metric
"task": "classification",
"n_concurrent_trials": 2, # Adjust the number of concurrent trials depending on your cluster setup
"use_spark": True,
"force_cancel": True, # Force cancel jobs if time limit is reached
}
# Create an AutoML instance
automl = AutoML()
# Run the AutoML search
# You need to replace 'psdf' with your actual pandas-on-spark DataFrame variable
# and 'label_column' with the name of your label column
automl.fit(dataframe=psdf, label=label_column, **automl_settings)
```
This code snippet assumes that the `data` variable contains the pandas DataFrame you want to classify and that `label_column` is the name of the target variable for the classification task. Make sure to replace 'data' and 'label_column' with your actual data and label column name before running this code.
--------------------------------------------------------------------------------
ragproxyagent (to assistant):
--------------------------------------------------------------------------------
assistant (to ragproxyagent):
UPDATE CONTEXT
--------------------------------------------------------------------------------
2024-06-11 19:57:44,122 - autogen.agentchat.contrib.retrieve_user_proxy_agent - INFO - Found 2 chunks.
Model gpt4-1106-preview not found. Using cl100k_base encoding.
Model gpt4-1106-preview not found. Using cl100k_base encoding.
Example 2
Use RetrieveChat to answer a question that is not related to code generation.
Problem: Who is the author of FLAML?
# reset the assistant. Always reset the assistant before starting a new conversation.
assistant.reset()
# Optionally create psycopg conn object
conn = psycopg.connect(conninfo="postgresql://postgres:postgres@localhost:5432/postgres", autocommit=True)
ragproxyagent = RetrieveUserProxyAgent(
name="ragproxyagent",
human_input_mode="NEVER",
max_consecutive_auto_reply=1,
retrieve_config={
"task": "code",
"docs_path": [
"https://raw.githubusercontent.com/microsoft/FLAML/main/website/docs/Examples/Integrate%20-%20Spark.md",
"https://raw.githubusercontent.com/microsoft/FLAML/main/website/docs/Research.md",
os.path.join(os.path.abspath(""), "..", "website", "docs"),
],
"custom_text_types": ["non-existent-type"],
"chunk_token_size": 2000,
"model": config_list[0]["model"],
"vector_db": "pgvector", # PGVector database
"collection_name": "flaml_collection",
"db_config": {
# "connection_string": "postgresql://postgres:postgres@localhost:5432/postgres", # Optional - connect to an external vector database
# "host": "postgres", # Optional vector database host
# "port": 5432, # Optional vector database port
# "dbname": "postgres", # Optional vector database name
# "username": "postgres", # Optional vector database username
# "password": "postgres", # Optional vector database password
"conn": conn, # Optional - conn object to connect to database
},
"get_or_create": True, # set to False if you don't want to reuse an existing collection
"overwrite": True, # set to True if you want to overwrite an existing collection
},
code_execution_config=False, # set to False if you don't want to execute the code
)
qa_problem = "Who is the author of FLAML?"
chat_result = ragproxyagent.initiate_chat(assistant, message=ragproxyagent.message_generator, problem=qa_problem)
/home/lijiang1/anaconda3/envs/autogen/lib/python3.10/site-packages/transformers/utils/generic.py:311: UserWarning: torch.utils._pytree._register_pytree_node is deprecated. Please use torch.utils._pytree.register_pytree_node instead.
torch.utils._pytree._register_pytree_node(
2024-06-11 19:58:21,076 - autogen.agentchat.contrib.retrieve_user_proxy_agent - INFO - Found 2 chunks.
Model gpt4-1106-preview not found. Using cl100k_base encoding.
Model gpt4-1106-preview not found. Using cl100k_base encoding.
Trying to create collection.
VectorDB returns doc_ids: [['7968cf3c', 'bdfbc921']]
Adding content of doc 7968cf3c to context.
Adding content of doc bdfbc921 to context.
ragproxyagent (to assistant):
You're a retrieve augmented coding assistant. You answer user's questions based on your own knowledge and the
context provided by the user.
If you can't answer the question with or without the current context, you should reply exactly `UPDATE CONTEXT`.
For code generation, you must obey the following rules:
Rule 1. You MUST NOT install any packages because all the packages needed are already installed.
Rule 2. You must follow the formats below to write your code:
```language
# your code
```
User's question is: Who is the author of FLAML?
Context is: # Research
For technical details, please check our research publications.
- [FLAML: A Fast and Lightweight AutoML Library](https://www.microsoft.com/en-us/research/publication/flaml-a-fast-and-lightweight-automl-library/). Chi Wang, Qingyun Wu, Markus Weimer, Erkang Zhu. MLSys 2021.
```bibtex
@inproceedings{wang2021flaml,
title={FLAML: A Fast and Lightweight AutoML Library},
author={Chi Wang and Qingyun Wu and Markus Weimer and Erkang Zhu},
year={2021},
booktitle={MLSys},
}
```
- [Frugal Optimization for Cost-related Hyperparameters](https://arxiv.org/abs/2005.01571). Qingyun Wu, Chi Wang, Silu Huang. AAAI 2021.
```bibtex
@inproceedings{wu2021cfo,
title={Frugal Optimization for Cost-related Hyperparameters},
author={Qingyun Wu and Chi Wang and Silu Huang},
year={2021},
booktitle={AAAI},
}
```
- [Economical Hyperparameter Optimization With Blended Search Strategy](https://www.microsoft.com/en-us/research/publication/economical-hyperparameter-optimization-with-blended-search-strategy/). Chi Wang, Qingyun Wu, Silu Huang, Amin Saied. ICLR 2021.
```bibtex
@inproceedings{wang2021blendsearch,
title={Economical Hyperparameter Optimization With Blended Search Strategy},
author={Chi Wang and Qingyun Wu and Silu Huang and Amin Saied},
year={2021},
booktitle={ICLR},
}
```
- [An Empirical Study on Hyperparameter Optimization for Fine-Tuning Pre-trained Language Models](https://aclanthology.org/2021.acl-long.178.pdf). Susan Xueqing Liu, Chi Wang. ACL 2021.
```bibtex
@inproceedings{liuwang2021hpolm,
title={An Empirical Study on Hyperparameter Optimization for Fine-Tuning Pre-trained Language Models},
author={Susan Xueqing Liu and Chi Wang},
year={2021},
booktitle={ACL},
}
```
- [ChaCha for Online AutoML](https://www.microsoft.com/en-us/research/publication/chacha-for-online-automl/). Qingyun Wu, Chi Wang, John Langford, Paul Mineiro and Marco Rossi. ICML 2021.
```bibtex
@inproceedings{wu2021chacha,
title={ChaCha for Online AutoML},
author={Qingyun Wu and Chi Wang and John Langford and Paul Mineiro and Marco Rossi},
year={2021},
booktitle={ICML},
}
```
- [Fair AutoML](https://arxiv.org/abs/2111.06495). Qingyun Wu, Chi Wang. ArXiv preprint arXiv:2111.06495 (2021).
```bibtex
@inproceedings{wuwang2021fairautoml,
title={Fair AutoML},
author={Qingyun Wu and Chi Wang},
year={2021},
booktitle={ArXiv preprint arXiv:2111.06495},
}
```
- [Mining Robust Default Configurations for Resource-constrained AutoML](https://arxiv.org/abs/2202.09927). Moe Kayali, Chi Wang. ArXiv preprint arXiv:2202.09927 (2022).
```bibtex
@inproceedings{kayaliwang2022default,
title={Mining Robust Default Configurations for Resource-constrained AutoML},
author={Moe Kayali and Chi Wang},
year={2022},
booktitle={ArXiv preprint arXiv:2202.09927},
}
```
- [Targeted Hyperparameter Optimization with Lexicographic Preferences Over Multiple Objectives](https://openreview.net/forum?id=0Ij9_q567Ma). Shaokun Zhang, Feiran Jia, Chi Wang, Qingyun Wu. ICLR 2023 (notable-top-5%).
```bibtex
@inproceedings{zhang2023targeted,
title={Targeted Hyperparameter Optimization with Lexicographic Preferences Over Multiple Objectives},
author={Shaokun Zhang and Feiran Jia and Chi Wang and Qingyun Wu},
booktitle={International Conference on Learning Representations},
year={2023},
url={https://openreview.net/forum?id=0Ij9_q567Ma},
}
```
- [Cost-Effective Hyperparameter Optimization for Large Language Model Generation Inference](https://arxiv.org/abs/2303.04673). Chi Wang, Susan Xueqing Liu, Ahmed H. Awadallah. ArXiv preprint arXiv:2303.04673 (2023).
```bibtex
@inproceedings{wang2023EcoOptiGen,
title={Cost-Effective Hyperparameter Optimization for Large Language Model Generation Inference},
author={Chi Wang and Susan Xueqing Liu and Ahmed H. Awadallah},
year={2023},
booktitle={ArXiv preprint arXiv:2303.04673},
}
```
- [An Empirical Study on Challenging Math Problem Solving with GPT-4](https://arxiv.org/abs/2306.01337). Yiran Wu, Feiran Jia, Shaokun Zhang, Hangyu Li, Erkang Zhu, Yue Wang, Yin Tat Lee, Richard Peng, Qingyun Wu, Chi Wang. ArXiv preprint arXiv:2306.01337 (2023).
```bibtex
@inproceedings{wu2023empirical,
title={An Empirical Study on Challenging Math Problem Solving with GPT-4},
author={Yiran Wu and Feiran Jia and Shaokun Zhang and Hangyu Li and Erkang Zhu and Yue Wang and Yin Tat Lee and Richard Peng and Qingyun Wu and Chi Wang},
year={2023},
booktitle={ArXiv preprint arXiv:2306.01337},
}
```
# Integrate - Spark
FLAML has integrated Spark for distributed training. There are two main aspects of integration with Spark:
- Use Spark ML estimators for AutoML.
- Use Spark to run training in parallel spark jobs.
## Spark ML Estimators
FLAML integrates estimators based on Spark ML models. These models are trained in parallel using Spark, so we called them Spark estimators. To use these models, you first need to organize your data in the required format.
### Data
For Spark estimators, AutoML only consumes Spark data. FLAML provides a convenient function `to_pandas_on_spark` in the `flaml.automl.spark.utils` module to convert your data into a pandas-on-spark (`pyspark.pandas`) dataframe/series, which Spark estimators require.
This utility function takes data in the form of a `pandas.Dataframe` or `pyspark.sql.Dataframe` and converts it into a pandas-on-spark dataframe. It also takes `pandas.Series` or `pyspark.sql.Dataframe` and converts it into a [pandas-on-spark](https://spark.apache.org/docs/latest/api/python/user_guide/pandas_on_spark/index.html) series. If you pass in a `pyspark.pandas.Dataframe`, it will not make any changes.
This function also accepts optional arguments `index_col` and `default_index_type`.
- `index_col` is the column name to use as the index, default is None.
- `default_index_type` is the default index type, default is "distributed-sequence". More info about default index type could be found on Spark official [documentation](https://spark.apache.org/docs/latest/api/python/user_guide/pandas_on_spark/options.html#default-index-type)
Here is an example code snippet for Spark Data:
```python
import pandas as pd
from flaml.automl.spark.utils import to_pandas_on_spark
# Creating a dictionary
data = {
"Square_Feet": [800, 1200, 1800, 1500, 850],
"Age_Years": [20, 15, 10, 7, 25],
"Price": [100000, 200000, 300000, 240000, 120000],
}
# Creating a pandas DataFrame
dataframe = pd.DataFrame(data)
label = "Price"
# Convert to pandas-on-spark dataframe
psdf = to_pandas_on_spark(dataframe)
```
To use Spark ML models you need to format your data appropriately. Specifically, use [`VectorAssembler`](https://spark.apache.org/docs/latest/api/python/reference/api/pyspark.ml.feature.VectorAssembler.html) to merge all feature columns into a single vector column.
Here is an example of how to use it:
```python
from pyspark.ml.feature import VectorAssembler
columns = psdf.columns
feature_cols = [col for col in columns if col != label]
featurizer = VectorAssembler(inputCols=feature_cols, outputCol="features")
psdf = featurizer.transform(psdf.to_spark(index_col="index"))["index", "features"]
```
Later in conducting the experiment, use your pandas-on-spark data like non-spark data and pass them using `X_train, y_train` or `dataframe, label`.
### Estimators
#### Model List
- `lgbm_spark`: The class for fine-tuning Spark version LightGBM models, using [SynapseML](https://microsoft.github.io/SynapseML/docs/features/lightgbm/about/) API.
#### Usage
First, prepare your data in the required format as described in the previous section.
By including the models you intend to try in the `estimators_list` argument to `flaml.automl`, FLAML will start trying configurations for these models. If your input is Spark data, FLAML will also use estimators with the `_spark` postfix by default, even if you haven't specified them.
Here is an example code snippet using SparkML models in AutoML:
```python
import flaml
# prepare your data in pandas-on-spark format as we previously mentioned
automl = flaml.AutoML()
settings = {
"time_budget": 30,
"metric": "r2",
"estimator_list": ["lgbm_spark"], # this setting is optional
"task": "regression",
}
automl.fit(
dataframe=psdf,
label=label,
**settings,
)
```
[Link to notebook](https://github.com/microsoft/FLAML/blob/main/notebook/automl_bankrupt_synapseml.ipynb) | [Open in colab](https://colab.research.google.com/github/microsoft/FLAML/blob/main/notebook/automl_bankrupt_synapseml.ipynb)
## Parallel Spark Jobs
You can activate Spark as the parallel backend during parallel tuning in both [AutoML](/docs/Use-Cases/Task-Oriented-AutoML#parallel-tuning) and [Hyperparameter Tuning](/docs/Use-Cases/Tune-User-Defined-Function#parallel-tuning), by setting the `use_spark` to `true`. FLAML will dispatch your job to the distributed Spark backend using [`joblib-spark`](https://github.com/joblib/joblib-spark).
Please note that you should not set `use_spark` to `true` when applying AutoML and Tuning for Spark Data. This is because only SparkML models will be used for Spark Data in AutoML and Tuning. As SparkML models run in parallel, there is no need to distribute them with `use_spark` again.
All the Spark-related arguments are stated below. These arguments are available in both Hyperparameter Tuning and AutoML:
- `use_spark`: boolean, default=False | Whether to use spark to run the training in parallel spark jobs. This can be used to accelerate training on large models and large datasets, but will incur more overhead in time and thus slow down training in some cases. GPU training is not supported yet when use_spark is True. For Spark clusters, by default, we will launch one trial per executor. However, sometimes we want to launch more trials than the number of executors (e.g., local mode). In this case, we can set the environment variable `FLAML_MAX_CONCURRENT` to override the detected `num_executors`. The final number of concurrent trials will be the minimum of `n_concurrent_trials` and `num_executors`.
- `n_concurrent_trials`: int, default=1 | The number of concurrent trials. When n_concurrent_trials > 1, FLAML performes parallel tuning.
- `force_cancel`: boolean, default=False | Whether to forcely cancel Spark jobs if the search time exceeded the time budget. Spark jobs include parallel tuning jobs and Spark-based model training jobs.
An example code snippet for using parallel Spark jobs:
```python
import flaml
automl_experiment = flaml.AutoML()
automl_settings = {
"time_budget": 30,
"metric": "r2",
"task": "regression",
"n_concurrent_trials": 2,
"use_spark": True,
"force_cancel": True, # Activating the force_cancel option can immediately halt Spark jobs once they exceed the allocated time_budget.
}
automl.fit(
dataframe=dataframe,
label=label,
**automl_settings,
)
```
[Link to notebook](https://github.com/microsoft/FLAML/blob/main/notebook/integrate_spark.ipynb) | [Open in colab](https://colab.research.google.com/github/microsoft/FLAML/blob/main/notebook/integrate_spark.ipynb)
--------------------------------------------------------------------------------
ragproxyagent (to assistant):
You're a retrieve augmented coding assistant. You answer user's questions based on your own knowledge and the
context provided by the user.
If you can't answer the question with or without the current context, you should reply exactly `UPDATE CONTEXT`.
For code generation, you must obey the following rules:
Rule 1. You MUST NOT install any packages because all the packages needed are already installed.
Rule 2. You must follow the formats below to write your code:
```language
# your code
```
User's question is: Who is the author of FLAML?
Context is: # Research
For technical details, please check our research publications.
- [FLAML: A Fast and Lightweight AutoML Library](https://www.microsoft.com/en-us/research/publication/flaml-a-fast-and-lightweight-automl-library/). Chi Wang, Qingyun Wu, Markus Weimer, Erkang Zhu. MLSys 2021.
```bibtex
@inproceedings{wang2021flaml,
title={FLAML: A Fast and Lightweight AutoML Library},
author={Chi Wang and Qingyun Wu and Markus Weimer and Erkang Zhu},
year={2021},
booktitle={MLSys},
}
```
- [Frugal Optimization for Cost-related Hyperparameters](https://arxiv.org/abs/2005.01571). Qingyun Wu, Chi Wang, Silu Huang. AAAI 2021.
```bibtex
@inproceedings{wu2021cfo,
title={Frugal Optimization for Cost-related Hyperparameters},
author={Qingyun Wu and Chi Wang and Silu Huang},
year={2021},
booktitle={AAAI},
}
```
- [Economical Hyperparameter Optimization With Blended Search Strategy](https://www.microsoft.com/en-us/research/publication/economical-hyperparameter-optimization-with-blended-search-strategy/). Chi Wang, Qingyun Wu, Silu Huang, Amin Saied. ICLR 2021.
```bibtex
@inproceedings{wang2021blendsearch,
title={Economical Hyperparameter Optimization With Blended Search Strategy},
author={Chi Wang and Qingyun Wu and Silu Huang and Amin Saied},
year={2021},
booktitle={ICLR},
}
```
- [An Empirical Study on Hyperparameter Optimization for Fine-Tuning Pre-trained Language Models](https://aclanthology.org/2021.acl-long.178.pdf). Susan Xueqing Liu, Chi Wang. ACL 2021.
```bibtex
@inproceedings{liuwang2021hpolm,
title={An Empirical Study on Hyperparameter Optimization for Fine-Tuning Pre-trained Language Models},
author={Susan Xueqing Liu and Chi Wang},
year={2021},
booktitle={ACL},
}
```
- [ChaCha for Online AutoML](https://www.microsoft.com/en-us/research/publication/chacha-for-online-automl/). Qingyun Wu, Chi Wang, John Langford, Paul Mineiro and Marco Rossi. ICML 2021.
```bibtex
@inproceedings{wu2021chacha,
title={ChaCha for Online AutoML},
author={Qingyun Wu and Chi Wang and John Langford and Paul Mineiro and Marco Rossi},
year={2021},
booktitle={ICML},
}
```
- [Fair AutoML](https://arxiv.org/abs/2111.06495). Qingyun Wu, Chi Wang. ArXiv preprint arXiv:2111.06495 (2021).
```bibtex
@inproceedings{wuwang2021fairautoml,
title={Fair AutoML},
author={Qingyun Wu and Chi Wang},
year={2021},
booktitle={ArXiv preprint arXiv:2111.06495},
}
```
- [Mining Robust Default Configurations for Resource-constrained AutoML](https://arxiv.org/abs/2202.09927). Moe Kayali, Chi Wang. ArXiv preprint arXiv:2202.09927 (2022).
```bibtex
@inproceedings{kayaliwang2022default,
title={Mining Robust Default Configurations for Resource-constrained AutoML},
author={Moe Kayali and Chi Wang},
year={2022},
booktitle={ArXiv preprint arXiv:2202.09927},
}
```
- [Targeted Hyperparameter Optimization with Lexicographic Preferences Over Multiple Objectives](https://openreview.net/forum?id=0Ij9_q567Ma). Shaokun Zhang, Feiran Jia, Chi Wang, Qingyun Wu. ICLR 2023 (notable-top-5%).
```bibtex
@inproceedings{zhang2023targeted,
title={Targeted Hyperparameter Optimization with Lexicographic Preferences Over Multiple Objectives},
author={Shaokun Zhang and Feiran Jia and Chi Wang and Qingyun Wu},
booktitle={International Conference on Learning Representations},
year={2023},
url={https://openreview.net/forum?id=0Ij9_q567Ma},
}
```
- [Cost-Effective Hyperparameter Optimization for Large Language Model Generation Inference](https://arxiv.org/abs/2303.04673). Chi Wang, Susan Xueqing Liu, Ahmed H. Awadallah. ArXiv preprint arXiv:2303.04673 (2023).
```bibtex
@inproceedings{wang2023EcoOptiGen,
title={Cost-Effective Hyperparameter Optimization for Large Language Model Generation Inference},
author={Chi Wang and Susan Xueqing Liu and Ahmed H. Awadallah},
year={2023},
booktitle={ArXiv preprint arXiv:2303.04673},
}
```
- [An Empirical Study on Challenging Math Problem Solving with GPT-4](https://arxiv.org/abs/2306.01337). Yiran Wu, Feiran Jia, Shaokun Zhang, Hangyu Li, Erkang Zhu, Yue Wang, Yin Tat Lee, Richard Peng, Qingyun Wu, Chi Wang. ArXiv preprint arXiv:2306.01337 (2023).
```bibtex
@inproceedings{wu2023empirical,
title={An Empirical Study on Challenging Math Problem Solving with GPT-4},
author={Yiran Wu and Feiran Jia and Shaokun Zhang and Hangyu Li and Erkang Zhu and Yue Wang and Yin Tat Lee and Richard Peng and Qingyun Wu and Chi Wang},
year={2023},
booktitle={ArXiv preprint arXiv:2306.01337},
}
```
# Integrate - Spark
FLAML has integrated Spark for distributed training. There are two main aspects of integration with Spark:
- Use Spark ML estimators for AutoML.
- Use Spark to run training in parallel spark jobs.
## Spark ML Estimators
FLAML integrates estimators based on Spark ML models. These models are trained in parallel using Spark, so we called them Spark estimators. To use these models, you first need to organize your data in the required format.
### Data
For Spark estimators, AutoML only consumes Spark data. FLAML provides a convenient function `to_pandas_on_spark` in the `flaml.automl.spark.utils` module to convert your data into a pandas-on-spark (`pyspark.pandas`) dataframe/series, which Spark estimators require.
This utility function takes data in the form of a `pandas.Dataframe` or `pyspark.sql.Dataframe` and converts it into a pandas-on-spark dataframe. It also takes `pandas.Series` or `pyspark.sql.Dataframe` and converts it into a [pandas-on-spark](https://spark.apache.org/docs/latest/api/python/user_guide/pandas_on_spark/index.html) series. If you pass in a `pyspark.pandas.Dataframe`, it will not make any changes.
This function also accepts optional arguments `index_col` and `default_index_type`.
- `index_col` is the column name to use as the index, default is None.
- `default_index_type` is the default index type, default is "distributed-sequence". More info about default index type could be found on Spark official [documentation](https://spark.apache.org/docs/latest/api/python/user_guide/pandas_on_spark/options.html#default-index-type)
Here is an example code snippet for Spark Data:
```python
import pandas as pd
from flaml.automl.spark.utils import to_pandas_on_spark
# Creating a dictionary
data = {
"Square_Feet": [800, 1200, 1800, 1500, 850],
"Age_Years": [20, 15, 10, 7, 25],
"Price": [100000, 200000, 300000, 240000, 120000],
}
# Creating a pandas DataFrame
dataframe = pd.DataFrame(data)
label = "Price"
# Convert to pandas-on-spark dataframe
psdf = to_pandas_on_spark(dataframe)
```
To use Spark ML models you need to format your data appropriately. Specifically, use [`VectorAssembler`](https://spark.apache.org/docs/latest/api/python/reference/api/pyspark.ml.feature.VectorAssembler.html) to merge all feature columns into a single vector column.
Here is an example of how to use it:
```python
from pyspark.ml.feature import VectorAssembler
columns = psdf.columns
feature_cols = [col for col in columns if col != label]
featurizer = VectorAssembler(inputCols=feature_cols, outputCol="features")
psdf = featurizer.transform(psdf.to_spark(index_col="index"))["index", "features"]
```
Later in conducting the experiment, use your pandas-on-spark data like non-spark data and pass them using `X_train, y_train` or `dataframe, label`.
### Estimators
#### Model List
- `lgbm_spark`: The class for fine-tuning Spark version LightGBM models, using [SynapseML](https://microsoft.github.io/SynapseML/docs/features/lightgbm/about/) API.
#### Usage
First, prepare your data in the required format as described in the previous section.
By including the models you intend to try in the `estimators_list` argument to `flaml.automl`, FLAML will start trying configurations for these models. If your input is Spark data, FLAML will also use estimators with the `_spark` postfix by default, even if you haven't specified them.
Here is an example code snippet using SparkML models in AutoML:
```python
import flaml
# prepare your data in pandas-on-spark format as we previously mentioned
automl = flaml.AutoML()
settings = {
"time_budget": 30,
"metric": "r2",
"estimator_list": ["lgbm_spark"], # this setting is optional
"task": "regression",
}
automl.fit(
dataframe=psdf,
label=label,
**settings,
)
```
[Link to notebook](https://github.com/microsoft/FLAML/blob/main/notebook/automl_bankrupt_synapseml.ipynb) | [Open in colab](https://colab.research.google.com/github/microsoft/FLAML/blob/main/notebook/automl_bankrupt_synapseml.ipynb)
## Parallel Spark Jobs
You can activate Spark as the parallel backend during parallel tuning in both [AutoML](/docs/Use-Cases/Task-Oriented-AutoML#parallel-tuning) and [Hyperparameter Tuning](/docs/Use-Cases/Tune-User-Defined-Function#parallel-tuning), by setting the `use_spark` to `true`. FLAML will dispatch your job to the distributed Spark backend using [`joblib-spark`](https://github.com/joblib/joblib-spark).
Please note that you should not set `use_spark` to `true` when applying AutoML and Tuning for Spark Data. This is because only SparkML models will be used for Spark Data in AutoML and Tuning. As SparkML models run in parallel, there is no need to distribute them with `use_spark` again.
All the Spark-related arguments are stated below. These arguments are available in both Hyperparameter Tuning and AutoML:
- `use_spark`: boolean, default=False | Whether to use spark to run the training in parallel spark jobs. This can be used to accelerate training on large models and large datasets, but will incur more overhead in time and thus slow down training in some cases. GPU training is not supported yet when use_spark is True. For Spark clusters, by default, we will launch one trial per executor. However, sometimes we want to launch more trials than the number of executors (e.g., local mode). In this case, we can set the environment variable `FLAML_MAX_CONCURRENT` to override the detected `num_executors`. The final number of concurrent trials will be the minimum of `n_concurrent_trials` and `num_executors`.
- `n_concurrent_trials`: int, default=1 | The number of concurrent trials. When n_concurrent_trials > 1, FLAML performes parallel tuning.
- `force_cancel`: boolean, default=False | Whether to forcely cancel Spark jobs if the search time exceeded the time budget. Spark jobs include parallel tuning jobs and Spark-based model training jobs.
An example code snippet for using parallel Spark jobs:
```python
import flaml
automl_experiment = flaml.AutoML()
automl_settings = {
"time_budget": 30,
"metric": "r2",
"task": "regression",
"n_concurrent_trials": 2,
"use_spark": True,
"force_cancel": True, # Activating the force_cancel option can immediately halt Spark jobs once they exceed the allocated time_budget.
}
automl.fit(
dataframe=dataframe,
label=label,
**automl_settings,
)
```
[Link to notebook](https://github.com/microsoft/FLAML/blob/main/notebook/integrate_spark.ipynb) | [Open in colab](https://colab.research.google.com/github/microsoft/FLAML/blob/main/notebook/integrate_spark.ipynb)
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assistant (to ragproxyagent):
The authors of FLAML are Chi Wang, Qingyun Wu, Markus Weimer, and Erkang Zhu.
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